Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885498.1_cds_XP_016439518.1_35066
CDS Infomation

[gene=LOC107765394] [db_xref=GeneID:107765394] [protein=metacaspase-1-like] [protein_id=XP_016439518.1] [location=join(3534..3936,4017..4335,5076..5187,5329..5505,5643..5699)] [gbkey=CDS]
Sequence

ATGTCTATGGCATGTCAAAAATGTCGACTGCCATTGACACTGCCACCGTATAGTCAACGA
CTTCGTTGTGAGTGTAGCAATTTGATTCAACTAGGCAATAGTGATAGGTCATTGCAGGTC
CAAGAGCGCGGTAGGATGAGTTCTAGAATGAGAAGATTTCGGGATAAAATTAGGAGAAAT
AGATCAAGAACGAAGAGTCTATCTCCTTCTCCGAGTGTTAGTCCTCGTTTACCTCTTATT
TTTACAAAGCCACCACCAAGTGGGAAGCGCGCATTCCTTTGTGGAGTGACTTACAAGAAG
GAGAAGTTCAGGCTCAGAGGAACATCGCATGATGTAAACAGCATGAGGGATTTGTTGGTC
CAAAAATTTAACTTTTCAGATGAATCCATTCTCATTCTAGCAGAAGAAGAGGCCTATAAT
CCTCCAACCAGGAGAAACATTTTAGACGCTTTCAAGTGGCTGATGGCAGACCTTAAATCA
GGTGACTCGTTGGTGTTCTACTTCTCAGGACATGGCTTACGACAACCTGATTTTAGCGAC
GATGAAACAGATGGTTTTGATGAAACAATATGTCCTCTTGACTTTAGGACTAAAGGCATG
ATCATTGATAATGCCATCAATGATATTCTTGTTAAGCCACTAATTTCTGGTGTTACACTT
CATGCTATCATCGACTCTTGTCATAGTGGAACTGTTCTCGACTTACCTTGGGTCTACAAA
GAGAATGGATGGGCTGATAACAGACCCCCATCCGGCGCTAATAAGAGCACGAGTGGTGGA
AGGGCTATCAGTTTGAGTGCTTGCAAGGATAATCAACTAGCTGCAGATACCTCTGCTTTC
TCTGCTGAAAAAACTATGACTGGTGCCATGACTTGCACATTTATTAGAGCTCTCAGGGAA
AATCCAGATATAACATACCAAGGGTTACTTGATTATATGCACAAGGCCATCGAAAAGGTC
AACAACGCTAGATGTCCGCTGCTGAAGGTATTCCAACGCAAGATAGACCAGGAACCAGTG
TTATCATCTTCTGAAAAATTTTACACTAATTCAAAGTTCAAGCTCTAA

Peptide Sequence

PEP ID

XP_016439518.1
PEP Infomation

PREDICTED: metacaspase-1-like [Nicotiana tabacum]
Sequence

MSMACQKCRLPLTLPPYSQRLRCECSNLIQLGNSDRSLQVQERGRMSSRMRRFRDKIRRN
RSRTKSLSPSPSVSPRLPLIFTKPPPSGKRAFLCGVTYKKEKFRLRGTSHDVNSMRDLLV
QKFNFSDESILILAEEEAYNPPTRRNILDAFKWLMADLKSGDSLVFYFSGHGLRQPDFSD
DETDGFDETICPLDFRTKGMIIDNAINDILVKPLISGVTLHAIIDSCHSGTVLDLPWVYK
ENGWADNRPPSGANKSTSGGRAISLSACKDNQLAADTSAFSAEKTMTGAMTCTFIRALRE
NPDITYQGLLDYMHKAIEKVNNARCPLLKVFQRKIDQEPVLSSSEKFYTNSKFKL

Transcript Sequence

Gene sequence data has not been registered.